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mask-ddpm/example/data_utils.py

127 lines
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Python
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#!/usr/bin/env python3
"""Small utilities for HAI 21.03 data loading and feature encoding."""
import csv
import gzip
import json
from typing import Dict, Iterable, List, Optional, Tuple
def load_split(path: str) -> Dict[str, List[str]]:
with open(path, "r", encoding="ascii") as f:
return json.load(f)
def iter_rows(path: str) -> Iterable[Dict[str, str]]:
with gzip.open(path, "rt", newline="") as f:
reader = csv.DictReader(f)
for row in reader:
yield row
def compute_cont_stats(
path: str,
cont_cols: List[str],
max_rows: Optional[int] = None,
) -> Tuple[Dict[str, float], Dict[str, float]]:
"""Streaming mean/std (Welford)."""
count = 0
mean = {c: 0.0 for c in cont_cols}
m2 = {c: 0.0 for c in cont_cols}
for i, row in enumerate(iter_rows(path)):
count += 1
for c in cont_cols:
x = float(row[c])
delta = x - mean[c]
mean[c] += delta / count
delta2 = x - mean[c]
m2[c] += delta * delta2
if max_rows is not None and i + 1 >= max_rows:
break
std = {}
for c in cont_cols:
if count > 1:
var = m2[c] / (count - 1)
else:
var = 0.0
std[c] = var ** 0.5 if var > 0 else 1.0
return mean, std
def build_vocab(
path: str,
disc_cols: List[str],
max_rows: Optional[int] = None,
) -> Dict[str, Dict[str, int]]:
values = {c: set() for c in disc_cols}
for i, row in enumerate(iter_rows(path)):
for c in disc_cols:
values[c].add(row[c])
if max_rows is not None and i + 1 >= max_rows:
break
vocab = {}
for c in disc_cols:
tokens = sorted(values[c])
if "<UNK>" not in tokens:
tokens.append("<UNK>")
vocab[c] = {tok: idx for idx, tok in enumerate(tokens)}
return vocab
def normalize_cont(x, cont_cols: List[str], mean: Dict[str, float], std: Dict[str, float]):
import torch
mean_t = torch.tensor([mean[c] for c in cont_cols], dtype=x.dtype, device=x.device)
std_t = torch.tensor([std[c] for c in cont_cols], dtype=x.dtype, device=x.device)
return (x - mean_t) / std_t
def windowed_batches(
path: str,
cont_cols: List[str],
disc_cols: List[str],
vocab: Dict[str, Dict[str, int]],
mean: Dict[str, float],
std: Dict[str, float],
batch_size: int,
seq_len: int,
max_batches: Optional[int] = None,
):
import torch
batch_cont = []
batch_disc = []
seq_cont = []
seq_disc = []
def flush_seq():
nonlocal seq_cont, seq_disc, batch_cont, batch_disc
if len(seq_cont) == seq_len:
batch_cont.append(seq_cont)
batch_disc.append(seq_disc)
seq_cont = []
seq_disc = []
batches_yielded = 0
for row in iter_rows(path):
cont_row = [float(row[c]) for c in cont_cols]
disc_row = [vocab[c].get(row[c], vocab[c]["<UNK>"]) for c in disc_cols]
seq_cont.append(cont_row)
seq_disc.append(disc_row)
if len(seq_cont) == seq_len:
flush_seq()
if len(batch_cont) == batch_size:
x_cont = torch.tensor(batch_cont, dtype=torch.float32)
x_disc = torch.tensor(batch_disc, dtype=torch.long)
x_cont = normalize_cont(x_cont, cont_cols, mean, std)
yield x_cont, x_disc
batch_cont = []
batch_disc = []
batches_yielded += 1
if max_batches is not None and batches_yielded >= max_batches:
return
# Drop last partial batch for simplicity